Whole-transciptome analysis of [psi+] budding yeast via cDNA microarrays

Introduction: Prions of yeast present a novel analytical challenge in terms of both initial characterization and in vitro manipulation as models for human disease research. Presently, few robust analysis strategies have been successfully implemented which enable the efficient study of prion behavior in vivo. This study sought to evaluate the utilization of conventional dual-channel cDNA microarrays for the surveillance of transcriptomic regulation patterns by the [PSI+] yeast prion relative to an identical prion deficient yeast variant, [psi-]. Methods: A data analysis and normalization workflow strategy was developed and applied to cDNA array images, yielded quality-regulated expression ratios for a subset of genes exhibiting statistical congruence across multiple experimental repetitions and nested hybridization events. The significant gene list was analyzed using classical analytical approaches including several clustering-based methods and singular value decomposition. To add biological meaning to the differential expression data in hand, functional annotation using the Gene Ontology as well as several pathway-mapping approaches was conducted. Finally, the expression patterns observed were queried against all publicly curated microarray data performed using S. cerevisiae in order to discover similar expression behavior across a vast array of experimental conditions. Results: These data collectively implicate a low-level of overall genomic regulation as a result of the [PSI+] state, where the maximum statistically significant degree of differential expression was less than ±1 Log2(FC) in all cases. Notwithstanding, the [PSI+] differential expression was localized to several specific classes of structural elements and cellular functions, implying under homeostatic conditions significant up or down regulation is likely unnecessary but possible in those specific systems if environmental conditions warranted. As a result of these findings additional work pertaining to this system should include controlled insult to both yeast variants of differing environmental properties to promote a potential [PSI+] regulatory response coupled with co-surveillance of these conditions using transcriptomic and proteomic analysis methodologies

What's at Stake for the State: Undocumented Californians, Immigration Reform, and Our Future Together

Building off a methodology originally pioneered by co-author Enrico A.Marcelli (Demographer, Department ofSociology, San Diego State University) to estimate the unauthorized, this is the first report to estimate undocumented Californians at this breadth and level of detail. One in six California children has at least one undocumented parent and 81% of those children are citizens. Nearly half (49%) of undocumented Californians have lived here more than 10 years. Undocumented Californians comprise nearly 7% of the state's total population, 8% of all adults and 9% of the state's workforce.However, achievement of these gains will require a clear and quick roadmap to citizenship. To succeed, federal immigration reform needs to take immigrant integration seriously, and the state and local governments will need to invest in programs to raise education levels, increase English fluency and improve job skills as a way to maximize the potential of undocumented Californians and build a stronger state

Plasma Heating Simulation in the VASIMR System

The paper describes the recent development in the simulation of the ion-cyclotron acceleration of the plasma in the VASIMR experiment. The modeling is done using an improved EMIR code for RF field calculation together with particle trajectory code for plasma transport calculat ion. The simulation results correlate with experimental data on the p lasma loading and predict higher ICRH performance for a higher density plasma target. These simulations assist in optimizing the ICRF anten na so as to achieve higher VASIMR efficiency

Sex and gender differences in symptoms of early psychosis: a systematic review and meta-analysis

First-episode psychosis (FEP) can be quite variable in clinical presentation, and both sex and gender may account for some of this variability. Prior literature on sex or gender differences in symptoms of psychosis have been inconclusive, and a comprehensive summary of evidence on the early course of illness is lacking. The objective of this study was to conduct a systematic review and meta-analysis of the literature to summarize prior evidence on the sex and gender differences in the symptoms of early psychosis. We conducted an electronic database search (MEDLINE, Scopus, PsycINFO, and CINAHL) from 1990 to present to identify quantitative studies focused on sex or gender differences in the symptoms of early psychosis. We used random effects models to compute pooled standardized mean differences (SMD) and risk ratios (RR), with 95% confidence intervals (CI), for a range of symptoms. Thirty-five studies met the inclusion criteria for the systematic review, and 30 studies were included in the meta-analysis. All studies examined sex differences. Men experienced more severe negative symptoms (SMD =  - 0.15, 95%CI =  - 0.21, - 0.09), whereas women experienced more severe depressive symptoms (SMD = 0.21, 95%CI = 0.14, 0.27) and had higher functioning (SMD = 0.16, 95%CI = 0.10, 0.23). Women also had a lower prevalence of substance use issues (RR = 0.65, 95%CI = 0.61, 0.69). Symptoms of early psychosis varied between men and women; however, we were limited in our ability to differentiate between biological sex and gender factors. These findings may help to inform early detection and intervention efforts to better account for sex and gender differences in early psychosis presentation

Metabolic and Ventilatory Responses to Interval-Based Active and Passive Treadmill Sprinting

Historically, exercise scientists and practitioners believed that continuous, steady exercise at a single moderate intensity was most beneficial for health, but recent findings suggests that higher intensity interval training may be more beneficial for many health and performance-based outcomes. Purpose: The purpose of this study was to compare the metabolic and ventilatory responses to a brief, intense interval protocol using a treadmill in the active and passive mode. Methods: Twelve physically fit participants (30.5±6.2y; 175.9±9.9 cm; 79.1±18.2 Kg) completed three exercise sessions. In the first session, biometric and demographic data were obtained prior to the performance of a peak VO2 treadmill test using a single speed, variable incline protocol. In sessions 2 and 3, participants performed an intense, 4-minute exercise protocol. The interval protocol consisted of eight repetitions, each 20 seconds in length with 10 seconds rest between with a 15% incline. The interval exercise was performed in an active or passive treadmill mode. During the active mode (ACT), participants controlled the speed of the treadmill belt using an electronic control board mounted on the front of the treadmill. During the passive mode (PAS), participants controlled the speed of the treadmill belt by exerting greater effort against the belt with their legs. In each condition, the participants were encouraged to exert a maximal effort; the ACT and PAS conditions were performed in random order on separate days. Continuous oxygen consumption (VO2), carbon dioxide production (VCO2), Respiratory Exchange Ratio (RER), and Ventilation (VE) were collected during all sessions using a metabolic cart and data were compared using a factorial ANOVA with repeated measures using mode (ACT vs PAS) and interval (8 intervals). Results: VO2 peak in the participants tested was 44.4±4.5 mL.kg-1.min-1. There was a significant mode by interval interaction for VO2 (p=0.003). VO2 was elevated compared to baseline in both conditions, but PAS was greater than ACT at intervals 2 (∆3.55 mL.kg-1.min-1; p=0.003) and 3 (∆3.40 mL.kg-1.min-1; p=0.004). There was a significant interaction for RER (pConclusions: The results indicate that participants completing self-selected sprints in the PAS mode exert greater metabolic effort in earlier, but not late intervals compared to ACT. This could be due to the extreme fatigue resulting from anaerobic work in PAS. Future studies should determine if participants training using ACT or PAS sprinting adapt strategies to improve metabolic efficiency or gain capabilities to exert greater metabolic effort during a single session of treadmill exercise

Nanoscale covariance magnetometry with diamond quantum sensors

Nitrogen vacancy (NV) centers in diamond are atom-scale defects with long spin coherence times that can be used to sense magnetic fields with high sensitivity and spatial resolution. Typically, the magnetic field projection at a single point is measured by averaging many sequential measurements with a single NV center, or the magnetic field distribution is reconstructed by taking a spatial average over an ensemble of many NV centers. In averaging over many single-NV center experiments, both techniques discard information. Here we propose and implement a new sensing modality, whereby two or more NV centers are measured simultaneously, and we extract temporal and spatial correlations in their signals that would otherwise be inaccessible. We analytically derive the measurable two-point correlator in the presence of environmental noise, quantum projection noise, and readout noise. We show that optimizing the readout noise is critical for measuring correlations, and we experimentally demonstrate measurements of correlated applied noise using spin-to-charge readout of two NV centers. We also implement a spectral reconstruction protocol for disentangling local and nonlocal noise sources, and demonstrate that independent control of two NV centers can be used to measure the temporal structure of correlations. Our covariance magnetometry scheme has numerous applications in studying spatiotemporal structure factors and dynamics, and opens a new frontier in nanoscale sensing

Resolvent estimates for normally hyperbolic trapped sets

We give pole free strips and estimates for resolvents of semiclassical operators which, on the level of the classical flow, have normally hyperbolic smooth trapped sets of codimension two in phase space. Such trapped sets are structurally stable and our motivation comes partly from considering the wave equation for Kerr black holes and their perturbations, whose trapped sets have precisely this structure. We give applications including local smoothing effects with epsilon derivative loss for the Schr\"odinger propagator as well as local energy decay results for the wave equation.Comment: Further changes to erratum correcting small problems with Section 3.5 and Lemma 4.1; this now also corrects hypotheses, explicitly requiring trapped set to be symplectic. Erratum follows references in this versio

ISS Space Plasma Laboratory: An ISS instrument package for investigating the opening/closing of solar and heliospheric magnetic fields

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/140428/1/6.2014-1422.pd